脑研究之利器：基于 NVIDIA GPU 的全脑尺度直接可视化方法.pdf

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1、Efficient tool for Brain ResearchWhole-Brain Direct Visualization based onNVIDIA GPU魏家飞脑科学与智能技术卓越创新中心中国科学院ChineseAcademyofSciences#page#OutlinecCenter and Research Background Introduction Solution for Whole-Brain Direct VisualizationCases Study and Perormance AnalysisSummary and Prospects#page#Cente

2、r for Excellence in Brain Science and Intelligence Technology (CEBSIT）脑科学与智能技术卓越创新中心（中科院脑智卓越中心）One Body Two Wings1999TO一体两翼（）IONBrain DiseasesBasic NeuroscienceBrain-inspired inteligence类脑人工智能脑疾病机理脑认知神经基础神经科学研究所2014（）CEBSITCenter for Excellence in BrainDawalopeffectiveapproachasin earlyUndarstandneu

3、ralbasiofcogntive functonstechnologiesScience and Inteligence Technology脑科学与智能技术卓越创新中心#page#Background Introduction- The Beautiful Brain#page#Background Introduction - Brain ImagingBigData脊椎类Brain Imaging脑成像哺乳类灵长类Brain 3D Image Data大脑三维图像数据Two-photon microscopyMagnetic Resonance Imaging双光子显微镜磁共振成像#p

4、age#Background Introduction- Big DataResolutionVolumeMouse Brain500 mm3TBmnbrafish Brain0.2mm3GETime#page#Background Introduction- Problem and ChallengeChallengesHardware Requirements Disk StorageVisalize CPU GPUMemory Software Requirements Scalables ParallelRemote High Rendering Performance#page#So

5、lution for Whole-Brain Direct VisualizationHardwares NVIDIA DGX ClusterDGX-1，DGX-2，DGXA100DVIDIAs Lenovo Distributed Storage (DSS-G）GPU-Accelerated Cluster SoftwareNVIDIAINDEXFORNVIDIA IndeXPARAVIEW PLUG-INInteractive Volume Visualization for Faster Disc ParaView + NVIDIA IndeX PluginSlurm08ParaView

6、IBM Spectrum ScaleslurmLenovo Distributed Storage SolutionIBMSpectrumScale#page#Solution Architecture.HPC Cluster (Shanghai）slurmanViePC(Beijing）ServeDGXA100DGX-1DGXHanaViDGX partitiondisplaysbatch#page#Sbatch for Running ParaView Server on Single Node#/bin/bash#SBATCH-Jrun_nvidia index paraview plu